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Table 3 Twenty most abundant CAZymes in the proteome of P. radiata

From: Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

Gene ID

Predicted function

Protein abundances

Average abundance on days 7–42

Transcripts up-regulated on wood

Cultivation time (days)

0

7

14

21

28

42

Plus.g1419

AA2: MnP1-Long

0.00

8.33

3.86

3.76

3.08

3.81

4.57

x

Plus.g11059

AA2: LiP3

0.00

5.37

4.32

2.58

1.10

0.70

2.81

x

Minus.g4265

AA5_1; glyoxal oxidase

0.00

2.32

1.25

0.75

0.88

2.10

1.46

x

Plus.g4813

AA3: GMC oxidoreductase

0.00

0.09

0.44

0.64

1.21

1.65

0.81

x

Plus.g10562

AA2: MnP2-Long

0.00

0.45

0.25

0.41

0.65

1.30

0.61

x

Minus.g11349

AA3: GMC oxidoreductase

0.00

0.79

0.61

0.46

0.39

0.37

0.52

x

Minus.g6827

AA2: LiP2

0.00

1.03

1.08

0.26

0.01

0.00

0.48

x

Minus.g7380

CE1

0.00

0.39

0.28

0.33

0.30

0.49

0.36

x

Plus.g453

AA2: MnP3-short

0.00

1.13

0.40

0.10

0.06

0.06

0.35

x

Minus.g2306

GH3

2.80

0.33

0.38

0.35

0.27

0.29

0.32

 

Minus.g3073

AA2: LiP1

0.00

0.91

0.32

0.10

0.00

0.00

0.27

x

Minus.g5595

GH7

0.00

0.16

0.54

0.34

0.18

0.04

0.25

x

Plus.g8163

GH7

0.00

0.01

0.05

0.13

0.39

0.53

0.22

x

Minus.g6399

GH3

0.01

0.11

0.15

0.20

0.25

0.40

0.22

x

Plus.g4342

GH6

0.00

0.20

0.32

0.22

0.23

0.10

0.22

x

Plus.g637

CE16

0.00

0.18

0.13

0.15

0.27

0.33

0.21

x

Minus.g12190

GH10

0.00

0.24

0.23

0.21

0.22

0.08

0.19

x

Minus.g11677

GH28

0.76

0.53

0.16

0.04

0.02

0.01

0.15

 

Plus.g7451

GH5

0.00

0.09

0.22

0.16

0.18

0.09

0.15

x

Plus.g9628

AA8-AA3_1: CDH

0.00

0.18

0.24

0.10

0.11

0.04

0.14

x

 

Proportion (%) of total proteome

3.57

22.84

15.22

11.27

9.81

12.38

14.30

 
  1. Gene ID corresponds to annotated gene locus on the P. radiata genome assembly. Protein abundances are calculated based on mass spectrometric signal intensity values per each time point. Up-regulated transcripts refer to transcripts with significantly higher level of expression (p < 0.05 and log2-fold change ≥1) on wood as compared to the malt extract cultivations at both time points
  2. MnP manganese peroxidase; LiP lignin peroxidase; CE carbohydrate esterase; CDH cellobiose dehydrogenase; GH glycoside hydrolase; GLOX glyoxal oxidase