Metric | Assembler | Final transcriptome | ||
---|---|---|---|---|
Trinitya | rnaSPAdesb | Trans-ABySSc | ||
Number of sequences | 136,294 | 138,896 | 158,095 | 62,596 |
Total nucleotide count (bp) | 74,660,373 | 66,613,178 | 73,637,461 | 52,719,740 |
Max. transcript length (bp) | 10,795 | 8173 | 10,360 | 10,360 |
Mean transcript length (bp) | 547 | 479 | 465 | 842 |
N50 (bp) | 659 | 538 | 520 | 1134 |